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COL4A5 (collagen type IV alpha 5 chain)

Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
1287
Gene nameGene Name - the full gene name approved by the HGNC.
Collagen type IV alpha 5 chain
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
COL4A5
SynonymsGene synonyms aliases
ASLN, ATS, ATS1, CA54
ChromosomeChromosome number
X
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq22.3
SummarySummary of gene provided in NCBI Entrez Gene.
This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. Mutations in this gene are associated with X-linked Alport syndrome, also known as hereditary nephritis. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene so that each gene pair shares a common promoter. Alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, Aug 2010]
SNPsSNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs5973838 C>A,G,T Pathogenic Intron variant
rs104886042 G>- Pathogenic Coding sequence variant, frameshift variant, genic upstream transcript variant
rs104886043 G>A Pathogenic Coding sequence variant, missense variant, genic upstream transcript variant
rs104886044 G>- Pathogenic Coding sequence variant, frameshift variant, genic upstream transcript variant
rs104886045 C>- Pathogenic Coding sequence variant, frameshift variant, genic upstream transcript variant
miRNAmiRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018772 hsa-miR-335-5p Microarray 18185580
MIRT030043 hsa-miR-26b-5p Microarray 19088304
MIRT053738 hsa-miR-29b-3p Microarray 22942087
MIRT450882 hsa-miR-222-5p PAR-CLIP 22100165
MIRT450883 hsa-miR-3171 PAR-CLIP 22100165
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005201 Function Extracellular matrix structural constituent IBA 21873635
GO:0005576 Component Extracellular region TAS
GO:0005587 Component Collagen type IV trimer IEA
GO:0005604 Component Basement membrane IBA 21873635
GO:0005615 Component Extracellular space IBA 21873635
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM
HGNC
e!Ensembl
Protein
UniProt ID P29400
Protein name Collagen alpha-5(IV) chain
Protein function Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.
PDB 5NAZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01391 Collagen
33 118
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
81 164
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
165 223
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
283 352
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
391 449
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
491 550
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
598 659
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
659 706
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
706 766
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
754 818
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
796 854
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
854 909
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
896 958
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
960 1019
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
1013 1072
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
1074 1133
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
1128 1189
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
1190 1248
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
1246 1315
Collagen triple helix repeat (20 copies)
Repeat
PF01391 Collagen
1400 1460
Collagen triple helix repeat (20 copies)
Repeat
PF01413 C4
1462 1569
C-terminal tandem repeated domain in type 4 procollagen
Domain
PF01413 C4
1572 1683
C-terminal tandem repeated domain in type 4 procollagen
Domain
Sequence
MKLRGVSLAAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDD
GIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMS
SLPGPKGNPGYPGPPG
IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQ
GPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTG
ITIGEKGN
IGLPGLPGEKGERGFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPG
PPGLDGQPGAPGLPGPPGPAGPHIPPSDE
ICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGF
PGSKGEPGDI
LTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKG
ERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQT
IT
QPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGI
PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP
GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG
IPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGM
MGPPGPPGP
LGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPN
LL
GSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPG
LPGQPGLI
GPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISS
IGLPGLPG
PKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTP
GPPGPKGISGPPG
NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF
GNPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGP
ALEGPKGNPGPQGPP
GRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPG
LNGMK
GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI
PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP
PGPDGLQGPPGPPGTSSVAH
GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMQPLKGQSIQPF
ISRCAVCEA
PAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTRISRCQV
CMK
RT
Sequence length 1685
Interactions View interactions

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