Gene
|
Entrez ID
Entrez Gene ID - the GENE ID in NCBI Gene database.
|
1284 |
Gene nameGene Name - the full gene name approved by the HGNC.
|
Collagen type IV alpha 2 chain |
Gene symbolGene Symbol - the official gene symbol approved by the HGNC, which is a short abbreviated form of the gene name.
|
COL4A2 |
SynonymsGene synonyms aliases
|
BSVD2, ICH, POREN2 |
ChromosomeChromosome number
|
13 |
Chromosome locationChromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
|
13q34 |
SummarySummary of gene provided in NCBI Entrez Gene.
|
This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. The C-terminal portion of the protein, known as canstatin, is an inhibitor of angiogenesis and tumor growth. Like the other members of the |
SNPsSNP information provided by dbSNP.
|
SNP ID |
Visualize variation |
Clinical significance |
Consequence |
rs12877501 |
G>A,C |
Likely-pathogenic, likely-benign |
Missense variant, coding sequence variant |
rs62621875 |
C>A |
Risk-factor, benign, likely-benign |
Missense variant, coding sequence variant |
rs117412802 |
A>G |
Likely-benign, risk-factor, benign |
Missense variant, coding sequence variant |
rs201105747 |
G>A,T |
Risk-factor, likely-benign, benign |
Coding sequence variant, missense variant |
rs387906602 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs387906603 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs776550709 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs969435078 |
->C |
Likely-pathogenic |
Coding sequence variant, frameshift variant |
rs1057519090 |
G>A |
Pathogenic |
Coding sequence variant, missense variant |
rs1057523764 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1064797180 |
G>A |
Likely-pathogenic |
Splice acceptor variant |
rs1085307983 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1555331796 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
rs1566525717 |
G>C |
Pathogenic |
Splice acceptor variant |
rs1594088780 |
G>A |
Likely-pathogenic |
Coding sequence variant, missense variant |
|
miRNAmiRNA information provided by mirtarbase database.
|
miRTarBase ID |
miRNA |
Experiments |
Reference |
MIRT001926 |
hsa-miR-29c-3p |
Luciferase reporter assay |
18390668 |
MIRT001926 |
hsa-miR-29c-3p |
Luciferase reporter assay |
18390668 |
MIRT001926 |
hsa-miR-29c-3p |
Luciferase reporter assay |
18390668 |
MIRT001926 |
hsa-miR-29c-3p |
Luciferase reporter assay |
18390668 |
MIRT001926 |
hsa-miR-29c-3p |
Luciferase reporter assay |
18390668 |
MIRT003220 |
hsa-miR-29a-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
20067797 |
MIRT003220 |
hsa-miR-29a-3p |
Luciferase reporter assay, qRT-PCR, Western blot |
20067797 |
MIRT003220 |
hsa-miR-29a-3p |
qRT-PCR |
22864815 |
MIRT001926 |
hsa-miR-29c-3p |
Reporter assay;Other |
18390668 |
MIRT020729 |
hsa-miR-155-5p |
Proteomics |
18668040 |
MIRT029546 |
hsa-miR-26b-5p |
Microarray |
19088304 |
MIRT051129 |
hsa-miR-16-5p |
CLASH |
23622248 |
MIRT049302 |
hsa-miR-92a-3p |
CLASH |
23622248 |
MIRT047706 |
hsa-miR-10a-5p |
CLASH |
23622248 |
MIRT040463 |
hsa-miR-615-3p |
CLASH |
23622248 |
MIRT054207 |
hsa-miR-210-3p |
Luciferase reporter assay, Microarray, qRT-PCR, Western blot |
23028679 |
MIRT054216 |
hsa-miR-147b |
Luciferase reporter assay, Microarray, qRT-PCR, Western blot |
23028679 |
MIRT003220 |
hsa-miR-29a-3p |
Luciferase reporter assay |
22745231 |
MIRT000099 |
hsa-miR-29b-3p |
Luciferase reporter assay |
22745231 |
MIRT001926 |
hsa-miR-29c-3p |
Luciferase reporter assay |
22745231 |
MIRT437565 |
hsa-miR-767-5p |
Luciferase reporter assay |
22745231 |
MIRT003220 |
hsa-miR-29a-3p |
Western blot, Luciferase reporter assay, Immunofluorescence |
25241894 |
MIRT000099 |
hsa-miR-29b-3p |
qRT-PCR |
25744716 |
MIRT732961 |
hsa-miR-1260a |
Immunofluorescence, Immunohistochemistry (IHC), RNA-seq, qRT-PCR, Western blotting |
34256779 |
MIRT733035 |
hsa-miR-122-5p |
RNA-seq |
33407671 |
MIRT054207 |
hsa-miR-210-3p |
Microarray, qRT-PCR |
35816043 |
MIRT902800 |
hsa-miR-3144-5p |
CLIP-seq |
|
MIRT902801 |
hsa-miR-3151 |
CLIP-seq |
|
MIRT902802 |
hsa-miR-3191 |
CLIP-seq |
|
MIRT902803 |
hsa-miR-34a |
CLIP-seq |
|
MIRT902804 |
hsa-miR-34c-5p |
CLIP-seq |
|
MIRT902805 |
hsa-miR-3937 |
CLIP-seq |
|
MIRT902806 |
hsa-miR-4297 |
CLIP-seq |
|
MIRT902807 |
hsa-miR-449a |
CLIP-seq |
|
MIRT902808 |
hsa-miR-449b |
CLIP-seq |
|
MIRT902809 |
hsa-miR-4652-5p |
CLIP-seq |
|
MIRT902810 |
hsa-miR-4690-5p |
CLIP-seq |
|
MIRT902811 |
hsa-miR-4746-3p |
CLIP-seq |
|
MIRT902812 |
hsa-miR-486-3p |
CLIP-seq |
|
MIRT902813 |
hsa-miR-491-5p |
CLIP-seq |
|
MIRT1547051 |
hsa-let-7a |
CLIP-seq |
|
MIRT1547052 |
hsa-let-7b |
CLIP-seq |
|
MIRT1547053 |
hsa-let-7c |
CLIP-seq |
|
MIRT1547054 |
hsa-let-7d |
CLIP-seq |
|
MIRT1547055 |
hsa-let-7e |
CLIP-seq |
|
MIRT1547056 |
hsa-let-7f |
CLIP-seq |
|
MIRT1547057 |
hsa-let-7g |
CLIP-seq |
|
MIRT1547058 |
hsa-let-7i |
CLIP-seq |
|
MIRT1547059 |
hsa-miR-106a |
CLIP-seq |
|
MIRT1547060 |
hsa-miR-106b |
CLIP-seq |
|
MIRT1547061 |
hsa-miR-1231 |
CLIP-seq |
|
MIRT1547062 |
hsa-miR-1256 |
CLIP-seq |
|
MIRT1547063 |
hsa-miR-1266 |
CLIP-seq |
|
MIRT1547064 |
hsa-miR-140-5p |
CLIP-seq |
|
MIRT1547065 |
hsa-miR-17 |
CLIP-seq |
|
MIRT1547066 |
hsa-miR-202 |
CLIP-seq |
|
MIRT1547067 |
hsa-miR-20a |
CLIP-seq |
|
MIRT1547068 |
hsa-miR-20b |
CLIP-seq |
|
MIRT1547069 |
hsa-miR-216a |
CLIP-seq |
|
MIRT1547070 |
hsa-miR-219-1-3p |
CLIP-seq |
|
MIRT1547071 |
hsa-miR-29a |
CLIP-seq |
|
MIRT1547072 |
hsa-miR-29b |
CLIP-seq |
|
MIRT1547073 |
hsa-miR-29c |
CLIP-seq |
|
MIRT1547074 |
hsa-miR-361-3p |
CLIP-seq |
|
MIRT1547075 |
hsa-miR-3622a-3p |
CLIP-seq |
|
MIRT1547076 |
hsa-miR-3622b-3p |
CLIP-seq |
|
MIRT1547077 |
hsa-miR-3650 |
CLIP-seq |
|
MIRT1547078 |
hsa-miR-3653 |
CLIP-seq |
|
MIRT1547079 |
hsa-miR-3658 |
CLIP-seq |
|
MIRT1547080 |
hsa-miR-3664-3p |
CLIP-seq |
|
MIRT1547081 |
hsa-miR-3674 |
CLIP-seq |
|
MIRT1547082 |
hsa-miR-3688-5p |
CLIP-seq |
|
MIRT902805 |
hsa-miR-3937 |
CLIP-seq |
|
MIRT1547083 |
hsa-miR-3941 |
CLIP-seq |
|
MIRT1547084 |
hsa-miR-3978 |
CLIP-seq |
|
MIRT1547085 |
hsa-miR-409-5p |
CLIP-seq |
|
MIRT1547086 |
hsa-miR-4270 |
CLIP-seq |
|
MIRT1547087 |
hsa-miR-4288 |
CLIP-seq |
|
MIRT902806 |
hsa-miR-4297 |
CLIP-seq |
|
MIRT1547088 |
hsa-miR-4441 |
CLIP-seq |
|
MIRT1547089 |
hsa-miR-4446-3p |
CLIP-seq |
|
MIRT1547090 |
hsa-miR-4455 |
CLIP-seq |
|
MIRT1547091 |
hsa-miR-4458 |
CLIP-seq |
|
MIRT1547092 |
hsa-miR-4459 |
CLIP-seq |
|
MIRT1547093 |
hsa-miR-4500 |
CLIP-seq |
|
MIRT1547094 |
hsa-miR-4518 |
CLIP-seq |
|
MIRT1547095 |
hsa-miR-4519 |
CLIP-seq |
|
MIRT1547096 |
hsa-miR-4530 |
CLIP-seq |
|
MIRT1547097 |
hsa-miR-4656 |
CLIP-seq |
|
MIRT1547098 |
hsa-miR-466 |
CLIP-seq |
|
MIRT1547099 |
hsa-miR-4666-5p |
CLIP-seq |
|
MIRT1547100 |
hsa-miR-4672 |
CLIP-seq |
|
MIRT902810 |
hsa-miR-4690-5p |
CLIP-seq |
|
MIRT902811 |
hsa-miR-4746-3p |
CLIP-seq |
|
MIRT1547101 |
hsa-miR-4779 |
CLIP-seq |
|
MIRT1547102 |
hsa-miR-4795-5p |
CLIP-seq |
|
MIRT1547103 |
hsa-miR-4802-3p |
CLIP-seq |
|
MIRT902812 |
hsa-miR-486-3p |
CLIP-seq |
|
MIRT1547104 |
hsa-miR-519a |
CLIP-seq |
|
MIRT1547105 |
hsa-miR-519b-3p |
CLIP-seq |
|
MIRT1547106 |
hsa-miR-519c-3p |
CLIP-seq |
|
MIRT1547107 |
hsa-miR-519d |
CLIP-seq |
|
MIRT1547108 |
hsa-miR-544b |
CLIP-seq |
|
MIRT1547109 |
hsa-miR-550a |
CLIP-seq |
|
MIRT1547110 |
hsa-miR-571 |
CLIP-seq |
|
MIRT1547111 |
hsa-miR-632 |
CLIP-seq |
|
MIRT1547112 |
hsa-miR-93 |
CLIP-seq |
|
MIRT1547113 |
hsa-miR-98 |
CLIP-seq |
|
MIRT1967736 |
hsa-miR-4640-5p |
CLIP-seq |
|
MIRT1967737 |
hsa-miR-4726-5p |
CLIP-seq |
|
MIRT902812 |
hsa-miR-486-3p |
CLIP-seq |
|
MIRT1547051 |
hsa-let-7a |
CLIP-seq |
|
MIRT1547052 |
hsa-let-7b |
CLIP-seq |
|
MIRT1547053 |
hsa-let-7c |
CLIP-seq |
|
MIRT1547054 |
hsa-let-7d |
CLIP-seq |
|
MIRT1547055 |
hsa-let-7e |
CLIP-seq |
|
MIRT1547056 |
hsa-let-7f |
CLIP-seq |
|
MIRT1547057 |
hsa-let-7g |
CLIP-seq |
|
MIRT1547058 |
hsa-let-7i |
CLIP-seq |
|
MIRT1547064 |
hsa-miR-140-5p |
CLIP-seq |
|
MIRT1547066 |
hsa-miR-202 |
CLIP-seq |
|
MIRT2203561 |
hsa-miR-3122 |
CLIP-seq |
|
MIRT2203562 |
hsa-miR-3143 |
CLIP-seq |
|
MIRT902800 |
hsa-miR-3144-5p |
CLIP-seq |
|
MIRT902801 |
hsa-miR-3151 |
CLIP-seq |
|
MIRT902802 |
hsa-miR-3191 |
CLIP-seq |
|
MIRT902803 |
hsa-miR-34a |
CLIP-seq |
|
MIRT902804 |
hsa-miR-34c-5p |
CLIP-seq |
|
MIRT1547075 |
hsa-miR-3622a-3p |
CLIP-seq |
|
MIRT1547076 |
hsa-miR-3622b-3p |
CLIP-seq |
|
MIRT1547077 |
hsa-miR-3650 |
CLIP-seq |
|
MIRT1547078 |
hsa-miR-3653 |
CLIP-seq |
|
MIRT1547079 |
hsa-miR-3658 |
CLIP-seq |
|
MIRT1547081 |
hsa-miR-3674 |
CLIP-seq |
|
MIRT2203563 |
hsa-miR-3913-5p |
CLIP-seq |
|
MIRT1547083 |
hsa-miR-3941 |
CLIP-seq |
|
MIRT1547085 |
hsa-miR-409-5p |
CLIP-seq |
|
MIRT1547090 |
hsa-miR-4455 |
CLIP-seq |
|
MIRT1547091 |
hsa-miR-4458 |
CLIP-seq |
|
MIRT1547092 |
hsa-miR-4459 |
CLIP-seq |
|
MIRT2203564 |
hsa-miR-4487 |
CLIP-seq |
|
MIRT902807 |
hsa-miR-449a |
CLIP-seq |
|
MIRT902808 |
hsa-miR-449b |
CLIP-seq |
|
MIRT1547093 |
hsa-miR-4500 |
CLIP-seq |
|
MIRT2203565 |
hsa-miR-4633-3p |
CLIP-seq |
|
MIRT902809 |
hsa-miR-4652-5p |
CLIP-seq |
|
MIRT1547098 |
hsa-miR-466 |
CLIP-seq |
|
MIRT1547099 |
hsa-miR-4666-5p |
CLIP-seq |
|
MIRT1547100 |
hsa-miR-4672 |
CLIP-seq |
|
MIRT2203566 |
hsa-miR-4720-5p |
CLIP-seq |
|
MIRT1547101 |
hsa-miR-4779 |
CLIP-seq |
|
MIRT2203567 |
hsa-miR-4799-3p |
CLIP-seq |
|
MIRT1547103 |
hsa-miR-4802-3p |
CLIP-seq |
|
MIRT902812 |
hsa-miR-486-3p |
CLIP-seq |
|
MIRT902813 |
hsa-miR-491-5p |
CLIP-seq |
|
MIRT2203568 |
hsa-miR-543 |
CLIP-seq |
|
MIRT1547108 |
hsa-miR-544b |
CLIP-seq |
|
MIRT2203569 |
hsa-miR-609 |
CLIP-seq |
|
MIRT1547113 |
hsa-miR-98 |
CLIP-seq |
|
MIRT902805 |
hsa-miR-3937 |
CLIP-seq |
|
MIRT902806 |
hsa-miR-4297 |
CLIP-seq |
|
MIRT902810 |
hsa-miR-4690-5p |
CLIP-seq |
|
MIRT902811 |
hsa-miR-4746-3p |
CLIP-seq |
|
MIRT1547109 |
hsa-miR-550a |
CLIP-seq |
|
MIRT1547051 |
hsa-let-7a |
CLIP-seq |
|
MIRT1547052 |
hsa-let-7b |
CLIP-seq |
|
MIRT1547053 |
hsa-let-7c |
CLIP-seq |
|
MIRT1547054 |
hsa-let-7d |
CLIP-seq |
|
MIRT1547055 |
hsa-let-7e |
CLIP-seq |
|
MIRT1547056 |
hsa-let-7f |
CLIP-seq |
|
MIRT1547057 |
hsa-let-7g |
CLIP-seq |
|
MIRT1547058 |
hsa-let-7i |
CLIP-seq |
|
MIRT1547059 |
hsa-miR-106a |
CLIP-seq |
|
MIRT1547060 |
hsa-miR-106b |
CLIP-seq |
|
MIRT1547061 |
hsa-miR-1231 |
CLIP-seq |
|
MIRT1547062 |
hsa-miR-1256 |
CLIP-seq |
|
MIRT1547064 |
hsa-miR-140-5p |
CLIP-seq |
|
MIRT1547065 |
hsa-miR-17 |
CLIP-seq |
|
MIRT1547066 |
hsa-miR-202 |
CLIP-seq |
|
MIRT1547067 |
hsa-miR-20a |
CLIP-seq |
|
MIRT1547068 |
hsa-miR-20b |
CLIP-seq |
|
MIRT1547074 |
hsa-miR-361-3p |
CLIP-seq |
|
MIRT1547075 |
hsa-miR-3622a-3p |
CLIP-seq |
|
MIRT1547076 |
hsa-miR-3622b-3p |
CLIP-seq |
|
MIRT1547077 |
hsa-miR-3650 |
CLIP-seq |
|
MIRT1547078 |
hsa-miR-3653 |
CLIP-seq |
|
MIRT1547079 |
hsa-miR-3658 |
CLIP-seq |
|
MIRT1547081 |
hsa-miR-3674 |
CLIP-seq |
|
MIRT1547082 |
hsa-miR-3688-5p |
CLIP-seq |
|
MIRT902805 |
hsa-miR-3937 |
CLIP-seq |
|
MIRT1547083 |
hsa-miR-3941 |
CLIP-seq |
|
MIRT1547084 |
hsa-miR-3978 |
CLIP-seq |
|
MIRT1547085 |
hsa-miR-409-5p |
CLIP-seq |
|
MIRT1547087 |
hsa-miR-4288 |
CLIP-seq |
|
MIRT902806 |
hsa-miR-4297 |
CLIP-seq |
|
MIRT1547090 |
hsa-miR-4455 |
CLIP-seq |
|
MIRT1547091 |
hsa-miR-4458 |
CLIP-seq |
|
MIRT1547092 |
hsa-miR-4459 |
CLIP-seq |
|
MIRT1547093 |
hsa-miR-4500 |
CLIP-seq |
|
MIRT1547095 |
hsa-miR-4519 |
CLIP-seq |
|
MIRT1547096 |
hsa-miR-4530 |
CLIP-seq |
|
MIRT1547098 |
hsa-miR-466 |
CLIP-seq |
|
MIRT1547099 |
hsa-miR-4666-5p |
CLIP-seq |
|
MIRT1547100 |
hsa-miR-4672 |
CLIP-seq |
|
MIRT902811 |
hsa-miR-4746-3p |
CLIP-seq |
|
MIRT1547101 |
hsa-miR-4779 |
CLIP-seq |
|
MIRT1547102 |
hsa-miR-4795-5p |
CLIP-seq |
|
MIRT1547103 |
hsa-miR-4802-3p |
CLIP-seq |
|
MIRT902812 |
hsa-miR-486-3p |
CLIP-seq |
|
MIRT1547104 |
hsa-miR-519a |
CLIP-seq |
|
MIRT1547105 |
hsa-miR-519b-3p |
CLIP-seq |
|
MIRT1547106 |
hsa-miR-519c-3p |
CLIP-seq |
|
MIRT1547107 |
hsa-miR-519d |
CLIP-seq |
|
MIRT1547108 |
hsa-miR-544b |
CLIP-seq |
|
MIRT1547109 |
hsa-miR-550a |
CLIP-seq |
|
MIRT2203569 |
hsa-miR-609 |
CLIP-seq |
|
MIRT1547111 |
hsa-miR-632 |
CLIP-seq |
|
MIRT1547112 |
hsa-miR-93 |
CLIP-seq |
|
MIRT1547113 |
hsa-miR-98 |
CLIP-seq |
|
MIRT2436296 |
hsa-miR-1207-5p |
CLIP-seq |
|
MIRT2436297 |
hsa-miR-1287 |
CLIP-seq |
|
MIRT2436298 |
hsa-miR-302a |
CLIP-seq |
|
MIRT2436299 |
hsa-miR-302b |
CLIP-seq |
|
MIRT2436300 |
hsa-miR-302c |
CLIP-seq |
|
MIRT2436301 |
hsa-miR-302d |
CLIP-seq |
|
MIRT2436302 |
hsa-miR-302e |
CLIP-seq |
|
MIRT2436303 |
hsa-miR-3135b |
CLIP-seq |
|
MIRT2436304 |
hsa-miR-372 |
CLIP-seq |
|
MIRT2436305 |
hsa-miR-373 |
CLIP-seq |
|
MIRT2436306 |
hsa-miR-4736 |
CLIP-seq |
|
MIRT2436307 |
hsa-miR-4763-3p |
CLIP-seq |
|
MIRT2436308 |
hsa-miR-512-3p |
CLIP-seq |
|
MIRT1547104 |
hsa-miR-519a |
CLIP-seq |
|
MIRT1547105 |
hsa-miR-519b-3p |
CLIP-seq |
|
MIRT1547106 |
hsa-miR-519c-3p |
CLIP-seq |
|
MIRT2436309 |
hsa-miR-520a-3p |
CLIP-seq |
|
MIRT2436310 |
hsa-miR-520b |
CLIP-seq |
|
MIRT2436311 |
hsa-miR-520c-3p |
CLIP-seq |
|
MIRT2436312 |
hsa-miR-520d-3p |
CLIP-seq |
|
MIRT2436313 |
hsa-miR-520e |
CLIP-seq |
|
MIRT2506558 |
hsa-miR-186 |
CLIP-seq |
|
MIRT2506559 |
hsa-miR-192 |
CLIP-seq |
|
MIRT2506560 |
hsa-miR-215 |
CLIP-seq |
|
MIRT2506561 |
hsa-miR-2964a-5p |
CLIP-seq |
|
MIRT2506562 |
hsa-miR-3130-5p |
CLIP-seq |
|
MIRT2506563 |
hsa-miR-3545-5p |
CLIP-seq |
|
MIRT2506564 |
hsa-miR-361-5p |
CLIP-seq |
|
MIRT1547082 |
hsa-miR-3688-5p |
CLIP-seq |
|
MIRT2506565 |
hsa-miR-4302 |
CLIP-seq |
|
MIRT2506566 |
hsa-miR-4436b-5p |
CLIP-seq |
|
MIRT2506567 |
hsa-miR-4470 |
CLIP-seq |
|
MIRT2506568 |
hsa-miR-4482 |
CLIP-seq |
|
MIRT2506569 |
hsa-miR-4682 |
CLIP-seq |
|
MIRT2506570 |
hsa-miR-4727-5p |
CLIP-seq |
|
MIRT2506571 |
hsa-miR-4764-5p |
CLIP-seq |
|
MIRT2506572 |
hsa-miR-4776-3p |
CLIP-seq |
|
MIRT2506573 |
hsa-miR-4796-5p |
CLIP-seq |
|
MIRT2506574 |
hsa-miR-601 |
CLIP-seq |
|
MIRT2506558 |
hsa-miR-186 |
CLIP-seq |
|
MIRT2506559 |
hsa-miR-192 |
CLIP-seq |
|
MIRT2506560 |
hsa-miR-215 |
CLIP-seq |
|
MIRT2506561 |
hsa-miR-2964a-5p |
CLIP-seq |
|
MIRT2506562 |
hsa-miR-3130-5p |
CLIP-seq |
|
MIRT2506563 |
hsa-miR-3545-5p |
CLIP-seq |
|
MIRT1547082 |
hsa-miR-3688-5p |
CLIP-seq |
|
MIRT2506565 |
hsa-miR-4302 |
CLIP-seq |
|
MIRT2506566 |
hsa-miR-4436b-5p |
CLIP-seq |
|
MIRT2506567 |
hsa-miR-4470 |
CLIP-seq |
|
MIRT2506568 |
hsa-miR-4482 |
CLIP-seq |
|
MIRT2506569 |
hsa-miR-4682 |
CLIP-seq |
|
MIRT2506570 |
hsa-miR-4727-5p |
CLIP-seq |
|
MIRT2506571 |
hsa-miR-4764-5p |
CLIP-seq |
|
MIRT2506572 |
hsa-miR-4776-3p |
CLIP-seq |
|
MIRT2506573 |
hsa-miR-4796-5p |
CLIP-seq |
|
MIRT2506574 |
hsa-miR-601 |
CLIP-seq |
|
|
Transcription factors
|
Transcription factor |
Regulation |
Reference |
VHL |
Unknown |
17700531 |
|
Gene ontology (GO)Gene ontology information of associated ontologies with gene provided by GO database.
|
GO ID |
Ontology |
Definition |
Evidence |
Reference |
GO:0001525 |
Process |
Angiogenesis |
IEA |
|
GO:0005201 |
Function |
Extracellular matrix structural constituent |
IBA |
21873635 |
GO:0005201 |
Function |
Extracellular matrix structural constituent |
TAS |
8317999 |
GO:0005515 |
Function |
Protein binding |
IPI |
12011424 |
GO:0005576 |
Component |
Extracellular region |
TAS |
|
GO:0005587 |
Component |
Collagen type IV trimer |
IBA |
21873635 |
GO:0005587 |
Component |
Collagen type IV trimer |
TAS |
2846280, 3345760 |
GO:0005615 |
Component |
Extracellular space |
IBA |
21873635 |
GO:0005788 |
Component |
Endoplasmic reticulum lumen |
TAS |
|
GO:0006351 |
Process |
Transcription, DNA-templated |
IEA |
|
GO:0007568 |
Process |
Aging |
IEA |
|
GO:0014823 |
Process |
Response to activity |
IEA |
|
GO:0016525 |
Process |
Negative regulation of angiogenesis |
IDA |
10625665 |
GO:0030020 |
Function |
Extracellular matrix structural constituent conferring tensile strength |
HDA |
28344315 |
GO:0030020 |
Function |
Extracellular matrix structural constituent conferring tensile strength |
ISS |
|
GO:0030020 |
Function |
Extracellular matrix structural constituent conferring tensile strength |
RCA |
20551380, 23979707, 25037231, 27068509, 27559042, 28327460, 28675934 |
GO:0030198 |
Process |
Extracellular matrix organization |
IBA |
21873635 |
GO:0030198 |
Process |
Extracellular matrix organization |
NAS |
8317999 |
GO:0030198 |
Process |
Extracellular matrix organization |
TAS |
|
GO:0031012 |
Component |
Extracellular matrix |
IBA |
21873635 |
GO:0035987 |
Process |
Endodermal cell differentiation |
IEP |
23154389 |
GO:0038063 |
Process |
Collagen-activated tyrosine kinase receptor signaling pathway |
IBA |
21873635 |
GO:0062023 |
Component |
Collagen-containing extracellular matrix |
HDA |
23658023, 23979707, 25037231, 27068509, 27559042, 28327460, 28344315, 28675934 |
GO:0062023 |
Component |
Collagen-containing extracellular matrix |
HDA |
20551380 |
GO:0062023 |
Component |
Collagen-containing extracellular matrix |
ISS |
22261194 |
GO:0062023 |
Component |
Collagen-containing extracellular matrix |
TAS |
22261194 |
GO:0070062 |
Component |
Extracellular exosome |
HDA |
23533145 |
GO:0071560 |
Process |
Cellular response to transforming growth factor beta stimulus |
IEA |
|
|
Other IDsOther ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
|
|
Protein
|
UniProt ID |
P08572 |
Protein name |
Collagen alpha-2(IV) chain [Cleaved into: Canstatin] |
Protein function |
Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.; Canstatin, a cleavage product corresponding to th |
PDB |
1LI1
,
5NAX
,
5NB2
,
6MPX
|
Family and domains |
Pfam
Accession |
ID |
Position in sequence |
Description |
Type |
PF01391 |
Collagen |
56 → 118 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
112 → 173 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
182 → 234 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
291 → 353 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
423 → 483 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
491 → 552 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
679 → 740 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
720 → 778 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
777 → 838 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
812 → 892 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
862 → 938 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
920 → 981 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
1032 → 1096 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
1098 → 1157 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
1152 → 1214 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
1278 → 1340 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01391 |
Collagen |
1332 → 1396 |
Collagen triple helix repeat (20 copies) |
Repeat |
PF01413 |
C4 |
1490 → 1595 |
C-terminal tandem repeated domain in type 4 procollagen |
Domain |
PF01413 |
C4 |
1598 → 1710 |
C-terminal tandem repeated domain in type 4 procollagen |
Domain |
|
Sequence |
|
Sequence length |
1712 |
Interactions |
View interactions |